Package: PathwaySpace
Type: Package
Title: Spatial Projection of Network Signals along Geodesic Paths
Version: 1.4.3
Authors@R: 
    c(person("Sysbiolab Team", role = "aut"),
      person("Victor", "Apolonio", role = "ctb"),
      person("Jonathan", "Back", role = "ctb"),
      person("Lana", "Querne", role = "ctb"),
      person("Vinicius", "Chagas", role = "ctb"),
      person("Bahar", "Tercan", role = "ctb"),
      person("Mauro", "Castro", role = c("cre"), 
              email = "mauro.a.castro@gmail.com", 
              comment = c(ORCID = "0000-0003-4942-8131"))
      )
Depends: R(>= 4.5), methods, RGraphSpace(>= 1.4.1)
Imports: grDevices, rlang, stats, scales, RANN, igraph, ggplot2, grid,
        ggnewscale, ggrepel, colorspace, lifecycle
Suggests: knitr, rmarkdown, testthat, RedeR, patchwork
Description: For a given graph containing vertices, edges, and a signal
        associated with the vertices, the 'PathwaySpace' package
        performs a convolution operation, which involves a weighted
        combination of neighboring vertices and their associated
        signals. The package uses a decay function to project these
        signals, creating geodesic paths on a 2D-image space.
        'PathwaySpace' has various applications, such as visualizing
        network data in a graphical format that highlights the
        relationships and signal strengths between vertices. By
        combining graph theory, signal processing, and visualization,
        'PathwaySpace' provides a way of representing graph data on a
        continuous projection space. Based on methods introduced in
        Tercan et al. (2025) <doi:10.1016/j.xpro.2025.103681> and
        Ellrott et al. (2025) <doi:10.1016/j.ccell.2024.12.002>.
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://sysbiolab.github.io/PathwaySpace/,
        https://github.com/sysbiolab/PathwaySpace
BugReports: https://github.com/sysbiolab/PathwaySpace/issues
Collate: pspace-checks.R pspace-supplements.R pspace-misc.R
        pspace-watershed.R pspace-decay.R pspace-classes.R
        pspace-generics.R pspace-methods.R pspace-plots.R
        annotation-pspace.R
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev
Repository: https://sysbiolab.r-universe.dev
Date/Publication: 2026-07-13 16:28:00 UTC
RemoteUrl: https://github.com/sysbiolab/pathwayspace
RemoteRef: HEAD
RemoteSha: 67dbc38ab384c8737c7170e015fb66a72c343aed
NeedsCompilation: no
Packaged: 2026-07-24 05:11:22 UTC; root
Author: Sysbiolab Team [aut],
  Victor Apolonio [ctb],
  Jonathan Back [ctb],
  Lana Querne [ctb],
  Vinicius Chagas [ctb],
  Bahar Tercan [ctb],
  Mauro Castro [cre] (ORCID: <https://orcid.org/0000-0003-4942-8131>)
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>