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Getting started with RGraphSpace14 days ago
Overview | Quick start | RGraphSpace attributes | Vertex attributes | Edge attributes | Arrowhead attributes | Passing graphs to geoms | Online tutorials | Other examples | Citation | Session information | References
Getting started with PathwaySpace projection methods19 days ago
Highlights | Overview | Setting basic input data | Checking graph validity | Creating a PathwaySpace object | Signal projection | Circular projection | Polar projection | Signal types | Online tutorials | Citation | Other useful links | Session information
TreeAndLeaf: A graph layout strategy for binary trees with focus on the leaves5 months ago
Overview | Quick Start | Package and data requirements | Building a dendrogram example | Converting the hclust object into a tree-and-leaf object | Setting graph attributes | Plotting a tree-and-leaf diagram | Setting the initial tree-and-leaf state with ggtree layouts | Building and plotting a phylo tree with ggtree layouts | Applying tree-and-leaf transformation to ggtree layouts | Case Study 1: visualizing a large dendrogram | Context | Building and plotting a large tree-and-leaf diagram | Case Study 2: visualizing a non-binary tree | Building and plotting a tree-and-leaf for a non-binary tree | Citation | Session information
RedeR: bridging network analysis and visualization5 months ago
Overview | Quick start | Initializing the interface | Displaying graphs | Working with containers | Interactive layout | Command-line attributes | Workflow examples | Nested subgraphs | Tree-and-leaf diagrams | Citation | Other useful links | System requirements | Session information